PEDANT: Protein Extraction, Description, and Analysis Tool
The PEDANT Genome Database contains automatically generated annotation of nearly 500 genomes by a variety of bioinformatics methods. Extensive graphical user interface, multiple functional and structural categories, detailed gene reports, DNA and Protein viewers, genome comparison.
Pedant Genome Database
Pedant software
MPPI: The MIPS Mammalian Protein–Protein Interaction database
Manually curated high-quality PPI data collected from the scientific literature by expert curators.
Prediction of interacting protein domains based on several computational methods as well as on experimental data.
The original DIMA method
The DIMA database
ISOBASE: A database of isochore information for all completely sequenced vertebrate genomes
Isochore assignments are made by several established techniques as well as by a consensus method. Confidence scores are also provided. Manuscript in preparation.
Automate standard tasks in comparative proteomics. PROMPT is a comprehensive bioinformatics software environment which enables the user to compare arbitrary protein sequence sets, revealing statistically significant differences in their annotation features.
A database of alpha-helical membrane protein families obtained by sequence clustering at three hierarchical levels: fold, function, and modeling distance.
HelixCorr is a software to predict correlated mutations specifically for the transmembrane parts of membrane proteins. It includes predictions obtained by several individual prediction algorithms and combines them to a consensus prediction.
HelixCorr is a software to predict correlated mutations specifically for the transmembrane parts of membrane proteins. It includes predictions obtained by several individual prediction algorithms and combines them to a consensus prediction.